rs30035273 SNP Detail

Summary

• ID
  rs30035273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25779460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATTACTG AGAGGGGCGT
  GGTTGATGGT AAAAGAGCTG TATCACCACA AAGTGCTTCC CCATTGTTGA TAGACGTCTA
  TGGAAGACCC ATCATAGGTT CTGACTTTCA CTTCTTATCT ACTTCTTATG TACTGCAGCA
  TCCCCAAAGA TCACTTATGT CTGGGAAGGG CAAGAAGGAG GAAGCAGAAA CCCCATGTGA
  R
  AGGTCTGTTA TTCCCTTTTC CTCTTCTTCC ATTAGGGAAT GCATTCCTCT CCTTCTATCA
  GGGAATTGTG ACCATTCCAT TATCCTTTTT ATAGACATAA GTAACATTGC CAAATTGTTT
  TTATTTTGTT CCTATGCTAG TGGGCCAATA CTTTTCTCTA TTTCGGGGGG GGGGGGTAAT
  GGTATAGTTA TATGATGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47407000	NES11357995	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A		A	A	G	G		G
ss324304522	CHEV_13_25687346	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30035273					SNP	G	G	G	G	G	G	G	A	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47407000	NES11357995	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25779460 () rs orientation: forward

Symbol	Name	Function Class
Rr275391	regulatory region 275391	60 bp distal
Rr275392	regulatory region 275392	1741 bp proximal