rs30036275 SNP Detail

Summary

• ID
  rs30036275
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25779601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAAGAT CACTTATGTC
  TGGGAAGGGC AAGAAGGAGG AAGCAGAAAC CCCATGTGAG AGGTCTGTTA TTCCCTTTTC
  CTCTTCTTCC ATTAGGGAAT GCATTCCTCT CCTTCTATCA GGGAATTGTG ACCATTCCAT
  TATCCTTTTT ATAGACATAA GTAACATTGC CAAATTGTTT TTATTTTGTT CCTATGCTAG
  W
  GGGCCAATAC TTTTCTCTAT TTCGGGGGGG GGGGGTAATG GTATAGTTAT ATGATGTTTG
  GAGAAAAATC CACAATATAA CACATGTTAT ACATGTCATG AGACTAAATG TATAGTAATA
  TGTGGATAAG GTAGCTTACA ATGAAATTTA CAGCAATAGT CTATAATTTC ATAGTGATTT
  CATATTGGCT CACCCTTTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47407003	NES11357996	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A		A	A	T	T		T
ss324304523	CHEV_13_25687487	CHEVERUD	SCREENING_POP	f	SNP										T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30036275					SNP	T	T	T	T	T	T	T	T	A	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47407003	NES11357996	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25779601 () rs orientation: forward

Symbol	Name	Function Class
Rr275391	regulatory region 275391	201 bp distal
Rr275392	regulatory region 275392	1600 bp proximal