rs30036277 SNP Detail

Summary

• ID
  rs30036277
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25779736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTATCC TTTTTATAGA
  CATAAGTAAC ATTGCCAAAT TGTTTTTATT TTGTTCCTAT GCTAGTGGGC CAATACTTTT
  CTCTATTTCG GGGGGGGGGG GTAATGGTAT AGTTATATGA TGTTTGGAGA AAAATCCACA
  ATATAACACA TGTTATACAT GTCATGAGAC TAAATGTATA GTAATATGTG GATAAGGTAG
  S
  TTACAATGAA ATTTACAGCA ATAGTCTATA ATTTCATAGT GATTTCATAT TGGCTCACCC
  TTTGTCTACA ATCTGTGAAC ATATTCCTTA CCCTTTTCTG AGCATAGTTG ACAGAATTAA
  CAATATTGTA AAGGTCACTT AGATTAGCAT AGGTATGTAT TTTGTACATA TAGATTGTGG
  AATCCAAGAT GGATATTCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47407006	NES11357997	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	G		G	G	C		C
ss324304524	CHEV_13_25687622	CHEVERUD	SCREENING_POP	f	SNP										C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30036277					SNP	C	C	C	C	C	C	C	C	G	C	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47407006	NES11357997	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25779736 () rs orientation: forward

Symbol	Name	Function Class
Rr275391	regulatory region 275391	336 bp distal
Rr275392	regulatory region 275392	1465 bp proximal