rs30036280 SNP Detail

Summary

• ID
  rs30036280
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25779765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGCCAAA TTGTTTTTAT
  TTTGTTCCTA TGCTAGTGGG CCAATACTTT TCTCTATTTC GGGGGGGGGG GGTAATGGTA
  TAGTTATATG ATGTTTGGAG AAAAATCCAC AATATAACAC ATGTTATACA TGTCATGAGA
  CTAAATGTAT AGTAATATGT GGATAAGGTA GCTTACAATG AAATTTACAG CAATAGTCTA
  Y
  AATTTCATAG TGATTTCATA TTGGCTCACC CTTTGTCTAC AATCTGTGAA CATATTCCTT
  ACCCTTTTCT GAGCATAGTT GACAGAATTA ACAATATTGT AAAGGTCACT TAGATTAGCA
  TAGGTATGTA TTTTGTACAT ATAGATTGTG GAATCCAAGA TGGATATTCA ATACTTCATC
  ATGAAGACAA CAGACCTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47407009	NES11357998	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	T
ss324304526	CHEV_13_25687651	CHEVERUD	SCREENING_POP	f	SNP							T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30036280					SNP	T	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47407009	NES11357998	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25779765 () rs orientation: forward

Symbol	Name	Function Class
Rr275391	regulatory region 275391	365 bp distal
Rr275392	regulatory region 275392	1436 bp proximal