rs30036283 SNP Detail

Summary

• ID
  rs30036283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25779769 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAAATTGT TTTTATTTTG
  TTCCTATGCT AGTGGGCCAA TACTTTTCTC TATTTCGGGG GGGGGGGGTA ATGGTATAGT
  TATATGATGT TTGGAGAAAA ATCCACAATA TAACACATGT TATACATGTC ATGAGACTAA
  ATGTATAGTA ATATGTGGAT AAGGTAGCTT ACAATGAAAT TTACAGCAAT AGTCTATAAT
  Y
  TCATAGTGAT TTCATATTGG CTCACCCTTT GTCTACAATC TGTGAACATA TTCCTTACCC
  TTTTCTGAGC ATAGTTGACA GAATTAACAA TATTGTAAAG GTCACTTAGA TTAGCATAGG
  TATGTATTTT GTACATATAG ATTGTGGAAT CCAAGATGGA TATTCAATAC TTCATCATGA
  AGACAACAGA CCTAACTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss47407012	NES11357999	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T		T		C
ss324304527	CHEV_13_25687655	CHEVERUD	SCREENING_POP	f	SNP								T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs30036283					SNP	T	T	T	T	T	C	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47407012	NES11357999	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25779769 () rs orientation: forward

Symbol	Name	Function Class
Rr275391	regulatory region 275391	369 bp distal
Rr275392	regulatory region 275392	1432 bp proximal