rs30036299 SNP Detail

Summary

• ID
  rs30036299
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103367072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGATG AGGGGACACG TGAAAGGCCA
  S
  TTCAGTCACA AAGCTGGCAT CCAGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46367132	mCV24890961	ABI	CRAMUS_MOUSE	f	SNP	G	G	C					C		C
ss61447818	NES16830619	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C	C		C	C	G	C	C	C	G	C	C
ss136878113	ENSMUSSNP5877839	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30036299					SNP	G	G	C	C	C	C	C	C	C	C	G	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61447818	NES16830619	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103367072 () rs orientation: forward

Symbol	Name	Function Class
Gm16252	predicted gene 16252	within coordinates
Rr192235	regulatory region 192235	329 bp proximal
Rr198519	regulatory region 198519	1729 bp proximal
Rr207116	regulatory region 207116	within coordinates
Tmem108	transmembrane protein 108	within coordinates
Tssr91216	transcription start site region 91216	563 bp upstream
Tssr91217	transcription start site region 91217	529 bp upstream
Tssr91218	transcription start site region 91218	497 bp upstream