rs30036397 SNP Detail

Summary

• ID
  rs30036397
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72265730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACTTTA TGAAATATCT
  ACTGAATATC AAAATAAGTA TAGTTTGGTT TTCATTTAAA ATGAAAGTGA CATTTTATGG
  GGGCTTGGGG GGGTTGAGTT CAGTTCACAA TACAGTGATA GACTCTGGTG CTTTAAATAT
  ATGCACAGAA TATTGACAGG ACATGAATTC AGAGACTGAA ACCTAAGGTT GTAGGGTATA
  R
  CTCAGAAGAG CTCCACTGTA CAGTGCACAT AGTCCTGGGC TGATCCTCAG CACTTTAATA
  ATAATAATAT TTCTACTTGT GTTTAGTAAT GGAGAATACA GTGGCTGCTG GTACATTTTG
  GGTGTTTTTG TCTTGATTTG TCTTATGGTG CCAGCATTTT TATTCCTGCT AGCTAGTCTT
  ATATTAAGAA TTGTGACTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46366840	mCV22917610	ABI	CRAMUS_MOUSE	f	SNP		A				G		G
ss50743274	NES14241826	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A		G		G	G	G	G	G	G
ss136620375	ENSMUSSNP3216342	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30036397					SNP	A	A	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50743274	NES14241826	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72265730 () rs orientation: forward

Symbol	Name	Function Class
Gm37303	predicted gene, 37303	1815 bp downstream
Gm37581	predicted gene, 37581	234 bp downstream
Tssr85980	transcription start site region 85980	670 bp downstream
Zfp280d	zinc finger protein 280D	within coordinates