rs30036742 SNP Detail

Summary

• ID
  rs30036742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86347821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTT CTATACCACT GTTCATCATT
  R
  AGGGATGTCA GGACAGGAAC CCAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J
ss46367045	mCV23664557	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss136756069	ENSMUSSNP1528966	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J
rs30036742					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86347821 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	651 bp distal
Cpgi22102	CpG island 22102	1149 bp proximal
Dop1a	DOP1 leucine zipper like protein A	1373 bp upstream
Rr684095	regulatory region 684095	829 bp distal
Rr684096	regulatory region 684096	328 bp distal
Rr684097	regulatory region 684097	789 bp distal
Rr684098	regulatory region 684098	896 bp proximal
Rr684099	regulatory region 684099	1313 bp proximal
Rr684100	regulatory region 684100	1397 bp proximal
Tssr86391	transcription start site region 86391	1395 bp upstream
Tssr86392	transcription start site region 86392	1405 bp upstream
Tssr86393	transcription start site region 86393	1456 bp upstream
Tssr90780	transcription start site region 90780	825 bp upstream
Tssr90781	transcription start site region 90781	810 bp upstream
Ube3d	ubiquitin protein ligase E3D	818 bp upstream