rs30037327 SNP Detail

Summary

• ID
  rs30037327
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25792031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATCCTT CAATATAACT
  TGTCATTTTT ATTTTCTTAC ATGTCTGATT ATTTTTGATT GAGAATCAAT TGTTGTCTAT
  GGGAATATAT ATACATAATA TGTTATCTTT CCCAGAAATT GTGTACTGTG TACTCACTAT
  CATTTAGTTA AAGAAACAGA TGATTAGTAA GCAAGCTTAG ATCATTTATA GCTATTTACC
  K
  ATTAATTTTA TTTTCTAACG ACCTTCTAGG TATCCTGGCT GTCCTGGAAG TACTTATGTA
  GACCAGGGTG GCCTTAGACT TACAGAGGTC CTCCTAGCTA TTCCAACTGA GTGCAGGGAT
  CCCAGGTATG TGCTATCCAG CCTGAAAGCA TTTGTTCTTA ATTCCCTCCT ATTCCTGGGT
  CACAGTCCTA AGTCTTAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47407018	NES11357397	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T		T	T	G	T		G
ss324304635	CHEV_13_25699917	CHEVERUD	SCREENING_POP	f	SNP											G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30037327					SNP	G	G	G	G	G	G	G	G	G	T	G	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47407018	NES11357397	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25792031 () rs orientation: forward

Symbol	Name	Function Class
Rr476237	regulatory region 476237	1624 bp proximal