rs30038229 SNP Detail

Summary

• ID
  rs30038229
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42174125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAG AAACACCCAC ATGGCCATAC
  M
  AAATTGTATG TAAATTGTAA AGGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46367153	mCV23263572	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss136379313	ENSMUSSNP5498800	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322933972	CHEV_9_42070912	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30038229					SNP	A	A	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42174125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	825 bp proximal
Gm10690	predicted gene 10690	1529 bp upstream
Rr368719	regulatory region 368719	1674 bp upstream
Rr401326	regulatory region 401326	1364 bp upstream
Rr677189	regulatory region 677189	766 bp proximal
Rr677190	regulatory region 677190	1361 bp proximal
Rr677191	regulatory region 677191	1641 bp proximal
Sc5d	sterol-C5-desaturase	within coordinates
Tssr84545	transcription start site region 84545	1642 bp upstream
Tssr89017	transcription start site region 89017	688 bp upstream
Tssr89018	transcription start site region 89018	1375 bp downstream
Tssr89019	transcription start site region 89019	1397 bp downstream