rs30038467 SNP Detail

Summary

• ID
  rs30038467
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50799605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGCCCCTAC ACAAGGATGA CATGCAAGTT CATGCAGTGC TCTGCACATC ATGGGAGGGC
  AGAAGGGTAA GAGGGTGGGT ATGAGGGGAG AACTGGATAT GTAGGTAGGT GTGAAGTCAT
  CAAAATAAAA CCCATTATCC TATACACTAA AAAAGTTAAA AAGTATTCAT ACCAAGATTA
  AAAAAAATAA CTTTAGTGTA CAAAGCCAGT CTTGCTCCTG AGAACTGCAG GCTGATCTTG
  GGTTCCTCCT TTCCTGGACC CACTTGGAGG TATGAGCACC CCTCAGATGC CAAGTGTCAC
  Y
  GTCTGAACTT TTAACTCTGA AGGCGTAGAG TAAGGGCTTT TCCCATTGGC CCAGGGTGAG
  CCTCTAGATC CTGGATGCAT TCTTCTAGAA ACTGAGCTGC TTTCTGTAGG TGAGGTTTCT
  GGAGAAGAGT CCAGAGAGTT CCCTGCACAC CCAAGGACTC TGATCCTACA ATGGACAGCA
  TGGGGAGGAA AGGAAAGGGC CGCTCCCAGG AGGGAAGCCT CGTCTGTTAG CACTGGCCAC
  AGGAGGGCTA GAGGCTTTGG AAATGTGCTT CCTGCTGGCC TGCAGCGTTC CGAGCTGCTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46368098	mCV25209790	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30038467					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50799605 () rs orientation: forward

Symbol	Name	Function Class
Gm25558	predicted gene, 25558	250 bp downstream
Ppp2r1b	protein phosphatase 2, regulatory subunit A, beta	within coordinates
Rr195477	regulatory region 195477	196 bp proximal
Rr209487	regulatory region 209487	within coordinates