rs30038788 SNP Detail

Summary

• ID
  rs30038788
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:113172309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA GCGAAATCAA GGTTCCCCCA
  R
  GGTGAGTTTT CTGGGCTTGC CCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39144624	mCV23842466	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss145257021	ENSMUSSNP6151299	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30038788					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:113172309 () rs orientation: forward

Symbol	Name	Function Class
Cdc20b	cell division cycle 20B	within coordinates
Cpgi6107	CpG island 6107	249 bp distal
Mir449a	microRNA 449a	1759 bp upstream
Mir449b	microRNA 449b	1644 bp upstream
Mir449c	microRNA 449c	208 bp upstream
Mirc34	microRNA cluster 34, including Mir449a through Mir449c	208 bp proximal
Rr486471	regulatory region 486471	386 bp distal
Rr486472	regulatory region 486472	329 bp proximal
Tssr121165	transcription start site region 121165	544 bp downstream
Tssr121166	transcription start site region 121166	1835 bp upstream