rs30038931 SNP Detail

Summary

• ID
  rs30038931
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42176730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTC CTATAATGGC TGTCTCACAT
  Y
  GGAAAAATGA ACAGCCTGGT AGAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46367256	mCV23263507	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss136379361	ENSMUSSNP2048335	ENSEMBL	ENSEMBL_Sanger	f	SNP			C		C
ss322933985	CHEV_9_42073517	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30038931					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42176730 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	791 bp distal
Gm10690	predicted gene 10690	within coordinates
Rr368719	regulatory region 368719	748 bp downstream
Rr401326	regulatory region 401326	940 bp downstream
Rr677189	regulatory region 677189	1245 bp distal
Rr677190	regulatory region 677190	965 bp distal
Rr677191	regulatory region 677191	404 bp distal
Sc5d	sterol-C5-desaturase	1178 bp upstream
Tssr84545	transcription start site region 84545	955 bp downstream
Tssr89018	transcription start site region 89018	1215 bp upstream
Tssr89019	transcription start site region 89019	1152 bp upstream