rs30039214 SNP Detail

Summary

• ID
  rs30039214
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75599428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCACCATC CACTGCTATT
  ATACAGCCCG AAAGGAGGAT TTTTTTTTCT TTTTTACATT TCTAATGAGG AAAACAACCA
  GCCAACCAAC CAACCTCTTG ATTCATGACA ATTACATAAA AATTATTTCC ATTCAGCTTT
  CAGTATCTAT AAATAAAATT ATAGTGACAC ACTGTCTCAT ATATTGTCTT TGACTTTATT
  M
  ATGAAACAAT TGAACAGCCA CCCCAAATCT AAAACACTTA CCATTAAAAG TATTGTTTTT
  TTTTAAATTA AATTTACAAC ATAAAATATA AATCTATCTA CAAGAGTGTG CCAACCCCTG
  AAGGAGATCA TTCTAAATTT TATTCCTAAG CAAATTAATC AATCACATAG AAGGAACTTT
  ACCCAGATGA GGTTCAATAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47905577	NES11936442	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30039214					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47905577	NES11936442	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75599428 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	within coordinates
Cpgi1728	CpG island 1728	202 bp proximal
Gm66464	predicted gene, 66464	877 bp upstream
Rr401992	regulatory region 401992	651 bp upstream
Rr434120	regulatory region 434120	199 bp distal
Rr434121	regulatory region 434121	145 bp proximal
Rr434122	regulatory region 434122	712 bp proximal
Rr434123	regulatory region 434123	888 bp proximal
Rr434124	regulatory region 434124	1733 bp proximal
Rr434125	regulatory region 434125	1876 bp proximal
Tssr94136	transcription start site region 94136	849 bp upstream
Tssr98119	transcription start site region 98119	588 bp downstream
Tssr98120	transcription start site region 98120	671 bp downstream