rs30039220 SNP Detail

Summary

• ID
  rs30039220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75599706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTACCCAGA TGAGGTTCAA TAGGCCACAC TGATGACCTA
  TAAGAAGTCA CGTCTTGAAG AGTTAAGCGG CAAAGTCCAC AAGTGCAGAA ACCTGACAGC
  R
  CCAGGTGAAG TCGTTCTACC TGCCTCCTCC ATGGAGGGTG TTGAGCAGAA TGGCTGCAGT
  CGGGGTAAGC CGCACCGGAA CTTTAAAGTC GTTTAAAACC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47905583	NES11936446	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs30039220					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47905583	NES11936446	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75599706 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	within coordinates
Cpgi1728	CpG island 1728	within coordinates
Gm66464	predicted gene, 66464	599 bp upstream
Rr401992	regulatory region 401992	373 bp upstream
Rr434120	regulatory region 434120	477 bp distal
Rr434121	regulatory region 434121	within coordinates
Rr434122	regulatory region 434122	434 bp proximal
Rr434123	regulatory region 434123	610 bp proximal
Rr434124	regulatory region 434124	1455 bp proximal
Rr434125	regulatory region 434125	1598 bp proximal
Tssr94136	transcription start site region 94136	571 bp upstream
Tssr98119	transcription start site region 98119	310 bp downstream
Tssr98120	transcription start site region 98120	393 bp downstream