rs30039391 SNP Detail

Summary

• ID
  rs30039391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:32608418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAGGTT GAGGGGGAGG
  TAGTGGGAGG AGAAACGAAC AGAATCTGTT TAACTTTGGG AAAGTCTGAT TCCTTCCTGG
  TCAGTGTAGT AACTAGCTTT ACTGCCTTTC TATTCTGCCA TCTTTTGGCC TCCCGTACCA
  AAGGTCCTTG AAGAAGGAAA GCATCCCACG ACCAGATGTA ACTTAGTGTC TTTGGCTCAT
  R
  GTTTTATTTA GCAGGCTTAA AGGATTTGAA GAAGAGAGGG AGAGTAAAGA CATCGAATAT
  TGTCTTAGAA GGAAATTTTA GTGTTCAACA GATGGAGTCA ACTCTTGGGG ATTCCTGAAG
  CTAGCAGAGT GCAAAGTGCC TACTTTTAGA ATAGGAAGCT GGACTCAGAG AAAAGTGACT
  TTGGAGGTGA AAGGATCTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46368412	mCV22734425	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	G
ss136249709	ENSMUSSNP5253770	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30039391					SNP	A	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:32608418 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21544	CpG island 21544	578 bp distal
Ets1	E26 avian leukemia oncogene 1, 5' domain	within coordinates
Rr206170	regulatory region 206170	within coordinates
Rr401307	regulatory region 401307	1046 bp downstream
Tssr84270	transcription start site region 84270	1436 bp downstream
Tssr84271	transcription start site region 84271	1417 bp downstream
Tssr84272	transcription start site region 84272	1403 bp downstream
Tssr84273	transcription start site region 84273	1347 bp downstream
Tssr84274	transcription start site region 84274	1306 bp downstream
Tssr84275	transcription start site region 84275	1027 bp downstream
Tssr84276	transcription start site region 84276	246 bp downstream
Tssr84277	transcription start site region 84277	111 bp downstream
Tssr84278	transcription start site region 84278	805 bp upstream
Tssr84279	transcription start site region 84279	1125 bp upstream