rs30039447 SNP Detail

Summary

• ID
  rs30039447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75576876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATAAAAC AAGGGATGGC
  TCTACCTAGG GAGGAAGCAA CCTGTTGCCT TACTTCTGCA GCAGACCAGA CACAGGCTGT
  CCACCTTTAA ACACTCACAA GTACCAGCAG TGTGATGTGT CATCCCCAGA GCACTACGGA
  AGCTAAGACT CAGGGACAGG GCACTGCCAA CCGGCACAGC TAGGAAAAGG TCGGCCCCAC
  Y
  TCTAGAGTCC AAAAGCTGGC TCTACTGGTT CACACTGTTC CTGGAGGGAA CAAGGCCAGT
  GTGGAAAAGC TACTTGGAGG TATTCCAGTG AGGTTTGCTC AGCAAGGAAG CAATGGCTCT
  ACAGGCATGT CAACTCAGCC TGACTCTCAG CCAGAAATCT TACCTGGAAT GGGCCCTGTG
  GTAGTCTGAA TGAGAATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47905387	NES11937687	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30039447					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47905387	NES11937687	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75576876 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	within coordinates
Rr216327	regulatory region 216327	276 bp distal
Rr216328	regulatory region 216328	1925 bp proximal