rs30039451 SNP Detail

Summary

• ID
  rs30039451
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75577031 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGCACT GCCAACCGGC
  ACAGCTAGGA AAAGGTCGGC CCCACTTCTA GAGTCCAAAA GCTGGCTCTA CTGGTTCACA
  CTGTTCCTGG AGGGAACAAG GCCAGTGTGG AAAAGCTACT TGGAGGTATT CCAGTGAGGT
  TTGCTCAGCA AGGAAGCAAT GGCTCTACAG GCATGTCAAC TCAGCCTGAC TCTCAGCCAG
  M
  AATCTTACCT GGAATGGGCC CTGTGGTAGT CTGAATGAGA ATGGCCCCAT AGGCTCATAA
  GTTTGAATAC TTATACCCAA CTGGTTAAAC AGTATGTGAA GAATCAGAAT GTATGGCCTT
  ATGGGAGAAG GTGTTCCACT GGGGGCAGGC GTGAGTTCCT GGCTATTTGT GAAGATGGAA
  GCTCTCAGTT GCTGCTTAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47905391	NES11937691	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30039451					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47905391	NES11937691	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75577031 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	within coordinates
Rr216327	regulatory region 216327	431 bp distal
Rr216328	regulatory region 216328	1770 bp proximal