rs30039654 SNP Detail

Summary

• ID
  rs30039654
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50322576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAT CACCTGCATT CTATCAGCAC
  S
  AACACAGAGT GCATCAGGAA GCCAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss49593910	NES12919676	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	C	C	C		G		C	C	C
ss135158461	ENSMUSSNP4812199	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G					G
ss320757178	CHEV_3_50172049	CHEVERUD	SCREENING_POP	f	SNP										G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs30039654					SNP	C	C	G	G	C	C	C	G	G	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593910	NES12919676	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50322576 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11			Intron
				mRNA-UTR
Tssr33101	transcription start site region 33101			1697 bp upstream
Tssr33102	transcription start site region 33102			1674 bp upstream
Tssr33103	transcription start site region 33103			1600 bp upstream
Tssr33104	transcription start site region 33104			1586 bp upstream
Tssr33105	transcription start site region 33105			1502 bp upstream
Tssr33106	transcription start site region 33106			1481 bp upstream
Tssr33107	transcription start site region 33107			1456 bp upstream
Tssr33108	transcription start site region 33108			1386 bp upstream
Tssr33109	transcription start site region 33109			1328 bp upstream
Tssr33110	transcription start site region 33110			1261 bp upstream
Tssr33111	transcription start site region 33111			1239 bp upstream
Tssr33112	transcription start site region 33112			1200 bp upstream
Tssr33113	transcription start site region 33113			1156 bp upstream
Tssr33114	transcription start site region 33114			1107 bp upstream
Tssr33115	transcription start site region 33115			1067 bp upstream
Tssr33116	transcription start site region 33116			662 bp upstream
Tssr33117	transcription start site region 33117			437 bp upstream
Tssr33118	transcription start site region 33118			404 bp upstream
Tssr33119	transcription start site region 33119			385 bp upstream
Tssr33120	transcription start site region 33120			154 bp downstream
Tssr33121	transcription start site region 33121			447 bp downstream
Tssr33122	transcription start site region 33122			541 bp downstream
Tssr33123	transcription start site region 33123			1549 bp downstream