rs30039660 SNP Detail

Summary

• ID
  rs30039660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50322203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCA TTTGCACCAG TTACGTGACA
  Y
  GATAGGGACA GATCATTTAT TTTTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49593916	NES12919670	PERLEGEN	MM_PANEL2	f	SNP	T			T	T	T	C		T		C	T	C		C
ss135158443	ENSMUSSNP5561746	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss320757172	CHEV_3_50171676	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30039660					SNP	T	T	C	T	T	T	C	C	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593916	NES12919670	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50322203 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11			Intron
				mRNA-UTR
Tssr33101	transcription start site region 33101			1324 bp upstream
Tssr33102	transcription start site region 33102			1301 bp upstream
Tssr33103	transcription start site region 33103			1227 bp upstream
Tssr33104	transcription start site region 33104			1213 bp upstream
Tssr33105	transcription start site region 33105			1129 bp upstream
Tssr33106	transcription start site region 33106			1108 bp upstream
Tssr33107	transcription start site region 33107			1083 bp upstream
Tssr33108	transcription start site region 33108			1013 bp upstream
Tssr33109	transcription start site region 33109			955 bp upstream
Tssr33110	transcription start site region 33110			888 bp upstream
Tssr33111	transcription start site region 33111			866 bp upstream
Tssr33112	transcription start site region 33112			827 bp upstream
Tssr33113	transcription start site region 33113			783 bp upstream
Tssr33114	transcription start site region 33114			734 bp upstream
Tssr33115	transcription start site region 33115			694 bp upstream
Tssr33116	transcription start site region 33116			289 bp upstream
Tssr33117	transcription start site region 33117			64 bp upstream
Tssr33118	transcription start site region 33118			31 bp upstream
Tssr33119	transcription start site region 33119			12 bp upstream
Tssr33120	transcription start site region 33120			527 bp downstream
Tssr33121	transcription start site region 33121			820 bp downstream
Tssr33122	transcription start site region 33122			914 bp downstream
Tssr33123	transcription start site region 33123			1922 bp downstream