GCCCA TAACATGTGC ATTTGCACCA S TTACGTGACA TGATAGGGAC AGATC S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
KK/HlJ |
LG/J |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49593917 | NES12919669 | PERLEGEN | MM_PANEL2 | f | SNP | G | C | G | G | G | C | G | G | G | C | ||||
ss135158440 | ENSMUSSNP6348100 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | C | ||||||||||||
ss320757171 | CHEV_3_50171665 | CHEVERUD | SCREENING_POP | f | SNP | C | G | ||||||||||||
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
KK/HlJ |
LG/J |
MOLF/EiJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs30039661 | SNP | G | C | C | G | G | G | C | C | C | G | G | G | G | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49593917 | NES12919669 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr3:50322192 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Slc7a11 | solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 | within coordinates | ||||||
Tssr33101 | transcription start site region 33101 | 1313 bp upstream | ||||||
Tssr33102 | transcription start site region 33102 | 1290 bp upstream | ||||||
Tssr33103 | transcription start site region 33103 | 1216 bp upstream | ||||||
Tssr33104 | transcription start site region 33104 | 1202 bp upstream | ||||||
Tssr33105 | transcription start site region 33105 | 1118 bp upstream | ||||||
Tssr33106 | transcription start site region 33106 | 1097 bp upstream | ||||||
Tssr33107 | transcription start site region 33107 | 1072 bp upstream | ||||||
Tssr33108 | transcription start site region 33108 | 1002 bp upstream | ||||||
Tssr33109 | transcription start site region 33109 | 944 bp upstream | ||||||
Tssr33110 | transcription start site region 33110 | 877 bp upstream | ||||||
Tssr33111 | transcription start site region 33111 | 855 bp upstream | ||||||
Tssr33112 | transcription start site region 33112 | 816 bp upstream | ||||||
Tssr33113 | transcription start site region 33113 | 772 bp upstream | ||||||
Tssr33114 | transcription start site region 33114 | 723 bp upstream | ||||||
Tssr33115 | transcription start site region 33115 | 683 bp upstream | ||||||
Tssr33116 | transcription start site region 33116 | 278 bp upstream | ||||||
Tssr33117 | transcription start site region 33117 | 53 bp upstream | ||||||
Tssr33118 | transcription start site region 33118 | 20 bp upstream | ||||||
Tssr33119 | transcription start site region 33119 | 1 bp upstream | ||||||
Tssr33120 | transcription start site region 33120 | 538 bp downstream | ||||||
Tssr33121 | transcription start site region 33121 | 831 bp downstream | ||||||
Tssr33122 | transcription start site region 33122 | 925 bp downstream | ||||||
Tssr33123 | transcription start site region 33123 | 1933 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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