rs30040116 SNP Detail

Summary

• ID
  rs30040116
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75600181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGGGCAGA AGACCCGCGC
  CCGTGCCTTC GGGTCTCGAG CCTGGCTTCG GCCCACCGCG CCCGGGAGGA AGGGGAAGAG
  CGGGTCTTCT CGCGTGGTTC CACCTCCTCG CGCTCACGGG AGCCGTGCGC ACACTTAGCA
  GACACACACA GCCCTTGCTC CCCGGAACTC GACCGGCGTC TCCAGGGCAA CGGCCGGAGC
  W
  CCCAGACTCC TGCGCGCGAC AAACCAACAA GGAACGCTCT CATTGGCTGA AGTGTCAGCC
  TTATCAGCCA ATCGGAGTAG GCTGTTTGGG CGGACCCACG GGTTCGCTGT GCGCTGTGTC
  TTTGACTCGC GCGCGTGGGA ACGCTGCTGC CTGCTGCTGC TGCGCTCCGC TACCTGCAGG
  ACTTAACAGT TTTGTTTTAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47905589	NES11936404	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	T	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs30040116					SNP	A	T	T	A	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47905589	NES11936404	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75600181 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	6 bp upstream
Cpgi1728	CpG island 1728	within coordinates
Gm66464	predicted gene, 66464	124 bp upstream
Rr401992	regulatory region 401992	within coordinates
Rr434120	regulatory region 434120	952 bp distal
Rr434121	regulatory region 434121	42 bp distal
Rr434122	regulatory region 434122	within coordinates
Rr434123	regulatory region 434123	135 bp proximal
Rr434124	regulatory region 434124	980 bp proximal
Rr434125	regulatory region 434125	1123 bp proximal
Rr434126	regulatory region 434126	1853 bp proximal
Tssr94136	transcription start site region 94136	96 bp upstream
Tssr98119	transcription start site region 98119	109 bp upstream
Tssr98120	transcription start site region 98120	within coordinates