rs30040120 SNP Detail

Summary

• ID
  rs30040120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75600533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTAAGCAGTG TCTCACTAGT GCAGCCCAAA CTAGCTTCGA
  ACTCGTGGCT ATCCTCCGGC TTCGGACTCC GGCTTGCTAA GGTTACTGGC CATCACATAC
  Y
  ACCACTTGCA CGCACGCTTT ATGAACGCGA GTTTACAAAC TAGAACCCCC CCCCCCCCCA
  TTCACTAAAA CAAGCGCATT GCTGCCAAAG ACCCGGAGCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47905593	NES11936375	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30040120					SNP	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47905593	NES11936375	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75600533 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	358 bp upstream
Cpgi1728	CpG island 1728	within coordinates
Gm66464	predicted gene, 66464	within coordinates
Rr401992	regulatory region 401992	153 bp downstream
Rr434120	regulatory region 434120	1304 bp distal
Rr434121	regulatory region 434121	394 bp distal
Rr434122	regulatory region 434122	218 bp distal
Rr434123	regulatory region 434123	within coordinates
Rr434124	regulatory region 434124	628 bp proximal
Rr434125	regulatory region 434125	771 bp proximal
Rr434126	regulatory region 434126	1501 bp proximal
Tssr94136	transcription start site region 94136	222 bp downstream
Tssr98119	transcription start site region 98119	461 bp upstream
Tssr98120	transcription start site region 98120	340 bp upstream