rs30040379 SNP Detail

Summary

• ID
  rs30040379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75578073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTATTGCA CTGCCACTGA
  TAGAACTGGC TGGTAACAAA GTACTCCATT CAGTCATTAG GGCTCTTCCA GGCATTAGAC
  AGACCATGAG ATTCCTGCCT CAAACTACAC AATGGCCCAA GTTCTAGACT TGGATCAGCC
  CTGGACCTGT GAAAGCTCCC AGTCACTGGC TCCCTGACCC AGACACTAGC CTTAAGAGGC
  R
  CTCACCTTGA TGTGCTTGTT GCTGCAGTCC CTCAGCAATG GGTTGGGCAG GCTGGTGCTA
  TGCCTCCTCC AGCTGTGGTA AACGCTAAGG ACGACATCCG CCAGCCCTGG GGGCCACTTG
  AGCAGGAACT TGTGGCCCAT GCTCTTCAGA TAACGCATCA TAAGCTCCAG GAGGCCCCCG
  TTGGTCAGGT TCTCCATCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47905399	NES11937664	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30040379					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47905399	NES11937664	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75578073 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	within coordinates
D10Jhu70	DNA segment, Chr 10, Johns Hopkins University 70	972 bp proximal
Rr216327	regulatory region 216327	1473 bp distal
Rr216328	regulatory region 216328	728 bp proximal
Rr220328	regulatory region 220328	1328 bp proximal
Rr220329	regulatory region 220329	1927 bp proximal