rs30040491 SNP Detail

Summary

• ID
  rs30040491
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96247816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG CTGCCTTGGA ACTCACTCTG
  Y
  AGACCAGGCT AGTTTCCAGA TCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss46368525	mCV24857926	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss136831162	ENSMUSSNP1714991	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss323108164	CHEV_9_96266182	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs30040491					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96247816 () rs orientation: forward

Symbol	Name	Function Class
Atp1b3	ATPase, Na+/K+ transporting, beta 3 polypeptide	1448 bp upstream
Cpgi22162	CpG island 22162	874 bp distal
Gm68867	predicted gene, 68867	within coordinates
Rr684945	regulatory region 684945	1332 bp distal
Rr684946	regulatory region 684946	831 bp distal
Tssr86601	transcription start site region 86601	1825 bp downstream
Tssr90956	transcription start site region 90956	1441 bp upstream
Tssr90957	transcription start site region 90957	1338 bp upstream
Tssr90958	transcription start site region 90958	1312 bp upstream