rs30040498 SNP Detail

Summary

• ID
  rs30040498
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAATCTA TTCACTCTAA
  AAATCTGTAG TGTGTATGCG AGTGTGTGTT GGGGGCGGGG GAGGGGGGAA GTGTGCTTCC
  TTTTGAATTG CCTCTGCCAG CCACATGGCT CTCAGATGCA TAATGAGTAA CTGGGTCTTT
  GAAAGTATTG CCTATAAAAT TGTGCAGGTG GGGACTGACA CCACAAAAGA ACCTCTGATC
  K
  AAACAGACTG AAATACACAC ACCAAGTAGC AGGGAGTTGT CTGCAGGCTG AAACCACCCT
  CCTCTGCATT TCAAGTCAAC TGGAAATAAG GAAGAGAAGG GAGGAACAGA TCTTTTCACT
  AAGAAAAATC TTAGGAAGTG AGTCTTTCTA TAGCTACCAT CTTGAAGGCA TTAATATCGA
  AAACTGAGAT AGAGCGAACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49593924	NES12919662	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30040498					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593924	NES12919662	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321851 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	972 bp upstream
Tssr33102	transcription start site region 33102	949 bp upstream
Tssr33103	transcription start site region 33103	875 bp upstream
Tssr33104	transcription start site region 33104	861 bp upstream
Tssr33105	transcription start site region 33105	777 bp upstream
Tssr33106	transcription start site region 33106	756 bp upstream
Tssr33107	transcription start site region 33107	731 bp upstream
Tssr33108	transcription start site region 33108	661 bp upstream
Tssr33109	transcription start site region 33109	603 bp upstream
Tssr33110	transcription start site region 33110	536 bp upstream
Tssr33111	transcription start site region 33111	514 bp upstream
Tssr33112	transcription start site region 33112	475 bp upstream
Tssr33113	transcription start site region 33113	431 bp upstream
Tssr33114	transcription start site region 33114	382 bp upstream
Tssr33115	transcription start site region 33115	342 bp upstream
Tssr33116	transcription start site region 33116	46 bp downstream
Tssr33117	transcription start site region 33117	276 bp downstream
Tssr33118	transcription start site region 33118	303 bp downstream
Tssr33119	transcription start site region 33119	329 bp downstream
Tssr33120	transcription start site region 33120	879 bp downstream
Tssr33121	transcription start site region 33121	1172 bp downstream
Tssr33122	transcription start site region 33122	1266 bp downstream