rs30040501 SNP Detail

Summary

• ID
  rs30040501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG TCCTCTAAAC AGTAATCTAT
  Y
  CACTCTAAAA ATCTGTAGTG TGTAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49593927	NES12919660	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T	T	C	C	C		T	C	T	T		C
ss135158422	ENSMUSSNP5851098	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320757165	CHEV_3_50171135	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30040501					SNP	T	C	C	C	T	T	T	C	C	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593927	NES12919660	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321662 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11			Intron
				mRNA-UTR
Tssr33101	transcription start site region 33101			783 bp upstream
Tssr33102	transcription start site region 33102			760 bp upstream
Tssr33103	transcription start site region 33103			686 bp upstream
Tssr33104	transcription start site region 33104			672 bp upstream
Tssr33105	transcription start site region 33105			588 bp upstream
Tssr33106	transcription start site region 33106			567 bp upstream
Tssr33107	transcription start site region 33107			542 bp upstream
Tssr33108	transcription start site region 33108			472 bp upstream
Tssr33109	transcription start site region 33109			414 bp upstream
Tssr33110	transcription start site region 33110			347 bp upstream
Tssr33111	transcription start site region 33111			325 bp upstream
Tssr33112	transcription start site region 33112			286 bp upstream
Tssr33113	transcription start site region 33113			242 bp upstream
Tssr33114	transcription start site region 33114			193 bp upstream
Tssr33115	transcription start site region 33115			153 bp upstream
Tssr33116	transcription start site region 33116			235 bp downstream
Tssr33117	transcription start site region 33117			465 bp downstream
Tssr33118	transcription start site region 33118			492 bp downstream
Tssr33119	transcription start site region 33119			518 bp downstream
Tssr33120	transcription start site region 33120			1068 bp downstream
Tssr33121	transcription start site region 33121			1361 bp downstream
Tssr33122	transcription start site region 33122			1455 bp downstream