rs30040502 SNP Detail

Summary

• ID
  rs30040502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGTGAAAA CCCCATCACA CAAAGTGCTC AGAACCCAGT
  TATCGCTGTG AAAGAGATAA CTGAGCATTA GTCTTCGCTT TCTCTCCCCT GCCTTCAACA
  Y
  TGCTTTTAGT GGCTTCATCA AGAGGTAGTA AGGACATAGC AAGCAGGTCC TCTAAACAGT
  AATCTATTCA CTCTAAAAAT CTGTAGTGTG TATGCGAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49593928	NES12919659	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30040502					SNP	C	C	T	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593928	NES12919659	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321594 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	715 bp upstream
Tssr33102	transcription start site region 33102	692 bp upstream
Tssr33103	transcription start site region 33103	618 bp upstream
Tssr33104	transcription start site region 33104	604 bp upstream
Tssr33105	transcription start site region 33105	520 bp upstream
Tssr33106	transcription start site region 33106	499 bp upstream
Tssr33107	transcription start site region 33107	474 bp upstream
Tssr33108	transcription start site region 33108	404 bp upstream
Tssr33109	transcription start site region 33109	346 bp upstream
Tssr33110	transcription start site region 33110	279 bp upstream
Tssr33111	transcription start site region 33111	257 bp upstream
Tssr33112	transcription start site region 33112	218 bp upstream
Tssr33113	transcription start site region 33113	174 bp upstream
Tssr33114	transcription start site region 33114	125 bp upstream
Tssr33115	transcription start site region 33115	85 bp upstream
Tssr33116	transcription start site region 33116	303 bp downstream
Tssr33117	transcription start site region 33117	533 bp downstream
Tssr33118	transcription start site region 33118	560 bp downstream
Tssr33119	transcription start site region 33119	586 bp downstream
Tssr33120	transcription start site region 33120	1136 bp downstream
Tssr33121	transcription start site region 33121	1429 bp downstream
Tssr33122	transcription start site region 33122	1523 bp downstream