rs30040503 SNP Detail

Summary

• ID
  rs30040503
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTGGTA GGATATGACT
  GTAGATCTGA GTCTATGGTT ATTAAGGGTC ATTAGTAAGA GTAAGGTGTG ACCACAAGCA
  ACCCACTTAT CCATCCAAAG ACCTAACACA TTTTCCCACA AGATGCTGTG AAAACCCCAT
  CACACAAAGT GCTCAGAACC CAGTTATCGC TGTGAAAGAG ATAACTGAGC ATTAGTCTTC
  R
  CTTTCTCTCC CCTGCCTTCA ACACTGCTTT TAGTGGCTTC ATCAAGAGGT AGTAAGGACA
  TAGCAAGCAG GTCCTCTAAA CAGTAATCTA TTCACTCTAA AAATCTGTAG TGTGTATGCG
  AGTGTGTGTT GGGGGCGGGG GAGGGGGGAA GTGTGCTTCC TTTTGAATTG CCTCTGCCAG
  CCACATGGCT CTCAGATGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49593929	NES12919658	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30040503					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593929	NES12919658	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321570 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	691 bp upstream
Tssr33102	transcription start site region 33102	668 bp upstream
Tssr33103	transcription start site region 33103	594 bp upstream
Tssr33104	transcription start site region 33104	580 bp upstream
Tssr33105	transcription start site region 33105	496 bp upstream
Tssr33106	transcription start site region 33106	475 bp upstream
Tssr33107	transcription start site region 33107	450 bp upstream
Tssr33108	transcription start site region 33108	380 bp upstream
Tssr33109	transcription start site region 33109	322 bp upstream
Tssr33110	transcription start site region 33110	255 bp upstream
Tssr33111	transcription start site region 33111	233 bp upstream
Tssr33112	transcription start site region 33112	194 bp upstream
Tssr33113	transcription start site region 33113	150 bp upstream
Tssr33114	transcription start site region 33114	101 bp upstream
Tssr33115	transcription start site region 33115	61 bp upstream
Tssr33116	transcription start site region 33116	327 bp downstream
Tssr33117	transcription start site region 33117	557 bp downstream
Tssr33118	transcription start site region 33118	584 bp downstream
Tssr33119	transcription start site region 33119	610 bp downstream
Tssr33120	transcription start site region 33120	1160 bp downstream
Tssr33121	transcription start site region 33121	1453 bp downstream
Tssr33122	transcription start site region 33122	1547 bp downstream