rs30040646 SNP Detail

Summary

• ID
  rs30040646
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68788177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGTCCTG GTTGGGGTGT
  AGTGGAGGGT CTTCCTATTT GGAGTTGCTT CTGACAACTT GCTACAAGGC TGTGAGAGAC
  ATCAACTGCA AACGCCCAAC TGCTGGTTAC GATGCTGCCC GTGGCATGGC TGCGACACAG
  TGCACACAGC TACAGCATCT GCAACATTCT GCCTACTTCA ATTCCAGAAA GGTTCTCAAT
  W
  TATACTCCAA CTCTGAGTAG ACAGGAGAGT GTCAGTTTGC ATAAGCCCTC ACTGACAACG
  CTCTCATCTG CCTTTTTTAT CTTTGCTAAT TGGATACGTT TTAAAGAGTA TAAGGCCCCT
  TAGTTTGCAT TTCTTTGATT GTAAATGATG CTTGATACTC TTTATTTCTT TAGATTAAAC
  AAAACTAGCA GTGTGGTGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46367872	mCV24203454	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
ss136597041	ENSMUSSNP1194852	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
ss322996720	CHEV_9_68728702	CHEVERUD	SCREENING_POP	f	SNP						A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30040646					SNP	T	T	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68788177 () rs orientation: forward

Symbol	Name	Function Class
D9Mit158	DNA segment, Chr 9, Massachusetts Institute of Technology 158	1283 bp proximal
Rora	RAR-related orphan receptor alpha	within coordinates
Tssr85829	transcription start site region 85829	1953 bp upstream