rs30041141 SNP Detail

Summary

• ID
  rs30041141
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110768448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCATTGCA AAGAACAGAC TGGGTGGCGG TGCACACCTC
  TAGTCCTGCT CAAGAAGCTG AAAGATCAAG GTCAAGGCTA GCCTATGCTA CGTTCAAAGT
  R
  AGACCACATT TCAAAAAATA AGAAAAAGGG GGGCTAAAGA GATGGCTCAG TGGTTAAGAG
  CACTGGCTGC TCTTCCAGAG GTCCTGAGTT CAAGTCCCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46367477	mCV24998871	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss136960314	ENSMUSSNP1147666	ENSEMBL	ENSEMBL_Sanger	f	SNP			G		G
ss323194884	CHEV_9_110841884	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30041141					SNP	G	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110768448 () rs orientation: forward

Symbol	Name	Function Class
Cripto	cripto, EGF-CFC family member	228 bp downstream
Rr192786	regulatory region 192786	1648 bp distal
Rr192787	regulatory region 192787	648 bp distal
Rr202610	regulatory region 202610	1681 bp distal
Rr207413	regulatory region 207413	1448 bp distal