rs30041269 SNP Detail

Summary

• ID
  rs30041269
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75580272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTAGCT GTGCACTAAA
  CACAGCCCTA GTTCTAAGAA TTGCACCCTC ATGGGAGAGA TGGTAGGAAG GGAACAAAGA
  GCAGTTAAGT GTATTGATAT AAAATGGATG CATAAGTCTG CTAAAGCCTC TAGATTCCTC
  TTGCACTGTC AGAAACAATA CTGATATAAA CTGTCACTGG TCAAAATGAC AACCAAAGAC
  K
  TGAGATATCT GGGCAGAGTA CTGATGAAAC CCTACTCAAG TAACAGTGGA GGGAGAAAGA
  CGAAGACACC GGAGATATGA GAGAAAGTCC TGGCAAGCCA AAAGTATGCC CCCAGATGCT
  GGGGAGGAGA ATGATGGATC AGAGCGCACT CTCCCGGGAA AGCAAAAGTG GGGCACCAAG
  AAGCATGCCC ACTGGCACAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47905409	NES11937540	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30041269					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47905409	NES11937540	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75580272 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	within coordinates
D10Jhu70	DNA segment, Chr 10, Johns Hopkins University 70	932 bp distal
Rr216328	regulatory region 216328	within coordinates
Rr220328	regulatory region 220328	472 bp distal
Rr220329	regulatory region 220329	within coordinates