rs30041273 SNP Detail

Summary

• ID
  rs30041273
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:75580435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAAACTG TCACTGGTCA
  AAATGACAAC CAAAGACTTG AGATATCTGG GCAGAGTACT GATGAAACCC TACTCAAGTA
  ACAGTGGAGG GAGAAAGACG AAGACACCGG AGATATGAGA GAAAGTCCTG GCAAGCCAAA
  AGTATGCCCC CAGATGCTGG GGAGGAGAAT GATGGATCAG AGCGCACTCT CCCGGGAAAG
  S
  AAAAGTGGGG CACCAAGAAG CATGCCCACT GGCACAATAA ATCCTAAACA GGCTCAGGAG
  AGAGCCCCTG GGGCTCCTGA AGAACAGCAG GGCCAGAGCA GGAGCAGTAA AAACCCAGGA
  CAGAAGTAGG GGCCCAGGCC CTCCTGTTTC AGAGAGCTGG CACCTTCTCT CCTGGAATTC
  TTTGAGGAAC ATGAAGAACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47905413	NES11937542	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30041273					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47905413	NES11937542	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:75580435 () rs orientation: forward

Symbol	Name	Function Class
Cabin1	calcineurin binding protein 1	within coordinates
D10Jhu70	DNA segment, Chr 10, Johns Hopkins University 70	1095 bp distal