rs30041374 SNP Detail

Summary

• ID
  rs30041374
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATCCTTC CAATTTTACA
  AGTAGGAACC TGCAGTGTCT TGTCTCCTGG TAGGATATGA CTGTAGATCT GAGTCTATGG
  TTATTAAGGG TCATTAGTAA GAGTAAGGTG TGACCACAAG CAACCCACTT ATCCATCCAA
  AGACCTAACA CATTTTCCCA CAAGATGCTG TGAAAACCCC ATCACACAAA GTGCTCAGAA
  M
  CCAGTTATCG CTGTGAAAGA GATAACTGAG CATTAGTCTT CGCTTTCTCT CCCCTGCCTT
  CAACACTGCT TTTAGTGGCT TCATCAAGAG GTAGTAAGGA CATAGCAAGC AGGTCCTCTA
  AACAGTAATC TATTCACTCT AAAAATCTGT AGTGTGTATG CGAGTGTGTG TTGGGGGCGG
  GGGAGGGGGG AAGTGTGCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49593930	NES12919657	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30041374					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593930	NES12919657	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321528 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11			Intron
				mRNA-UTR
Tssr33101	transcription start site region 33101			649 bp upstream
Tssr33102	transcription start site region 33102			626 bp upstream
Tssr33103	transcription start site region 33103			552 bp upstream
Tssr33104	transcription start site region 33104			538 bp upstream
Tssr33105	transcription start site region 33105			454 bp upstream
Tssr33106	transcription start site region 33106			433 bp upstream
Tssr33107	transcription start site region 33107			408 bp upstream
Tssr33108	transcription start site region 33108			338 bp upstream
Tssr33109	transcription start site region 33109			280 bp upstream
Tssr33110	transcription start site region 33110			213 bp upstream
Tssr33111	transcription start site region 33111			191 bp upstream
Tssr33112	transcription start site region 33112			152 bp upstream
Tssr33113	transcription start site region 33113			108 bp upstream
Tssr33114	transcription start site region 33114			59 bp upstream
Tssr33115	transcription start site region 33115			19 bp upstream
Tssr33116	transcription start site region 33116			369 bp downstream
Tssr33117	transcription start site region 33117			599 bp downstream
Tssr33118	transcription start site region 33118			626 bp downstream
Tssr33119	transcription start site region 33119			652 bp downstream
Tssr33120	transcription start site region 33120			1202 bp downstream
Tssr33121	transcription start site region 33121			1495 bp downstream
Tssr33122	transcription start site region 33122			1589 bp downstream