rs30041375 SNP Detail

Summary

• ID
  rs30041375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTAGTA AGTAGAGTGA
  CAGAGAGATT ATAGGCATAG AATAATTCCT AAATTCTTTG AAACAAGATC CTTCCAATTT
  TACAAGTAGG AACCTGCAGT GTCTTGTCTC CTGGTAGGAT ATGACTGTAG ATCTGAGTCT
  ATGGTTATTA AGGGTCATTA GTAAGAGTAA GGTGTGACCA CAAGCAACCC ACTTATCCAT
  Y
  CAAAGACCTA ACACATTTTC CCACAAGATG CTGTGAAAAC CCCATCACAC AAAGTGCTCA
  GAACCCAGTT ATCGCTGTGA AAGAGATAAC TGAGCATTAG TCTTCGCTTT CTCTCCCCTG
  CCTTCAACAC TGCTTTTAGT GGCTTCATCA AGAGGTAGTA AGGACATAGC AAGCAGGTCC
  TCTAAACAGT AATCTATTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49593931	NES12919656	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30041375					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593931	NES12919656	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321464 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	585 bp upstream
Tssr33102	transcription start site region 33102	562 bp upstream
Tssr33103	transcription start site region 33103	488 bp upstream
Tssr33104	transcription start site region 33104	474 bp upstream
Tssr33105	transcription start site region 33105	390 bp upstream
Tssr33106	transcription start site region 33106	369 bp upstream
Tssr33107	transcription start site region 33107	344 bp upstream
Tssr33108	transcription start site region 33108	274 bp upstream
Tssr33109	transcription start site region 33109	216 bp upstream
Tssr33110	transcription start site region 33110	149 bp upstream
Tssr33111	transcription start site region 33111	127 bp upstream
Tssr33112	transcription start site region 33112	88 bp upstream
Tssr33113	transcription start site region 33113	44 bp upstream
Tssr33114	transcription start site region 33114	within coordinates
Tssr33115	transcription start site region 33115	28 bp downstream
Tssr33116	transcription start site region 33116	433 bp downstream
Tssr33117	transcription start site region 33117	663 bp downstream
Tssr33118	transcription start site region 33118	690 bp downstream
Tssr33119	transcription start site region 33119	716 bp downstream
Tssr33120	transcription start site region 33120	1266 bp downstream
Tssr33121	transcription start site region 33121	1559 bp downstream
Tssr33122	transcription start site region 33122	1653 bp downstream