rs30041376 SNP Detail

Summary

• ID
  rs30041376
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAT ATGACTGTAG ATCTGAGTCT
  R
  TGGTTATTAA GGGTCATTAG TAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49593932	NES12919655	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	A	A	G	G	G		A	G	A	A		G
ss135158416	ENSMUSSNP87564	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss320757163	CHEV_3_50170877	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30041376					SNP	A	G	G	G	A	A	A	G	G	G	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593932	NES12919655	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321404 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	525 bp upstream
Tssr33102	transcription start site region 33102	502 bp upstream
Tssr33103	transcription start site region 33103	428 bp upstream
Tssr33104	transcription start site region 33104	414 bp upstream
Tssr33105	transcription start site region 33105	330 bp upstream
Tssr33106	transcription start site region 33106	309 bp upstream
Tssr33107	transcription start site region 33107	284 bp upstream
Tssr33108	transcription start site region 33108	214 bp upstream
Tssr33109	transcription start site region 33109	156 bp upstream
Tssr33110	transcription start site region 33110	89 bp upstream
Tssr33111	transcription start site region 33111	67 bp upstream
Tssr33112	transcription start site region 33112	28 bp upstream
Tssr33113	transcription start site region 33113	5 bp downstream
Tssr33114	transcription start site region 33114	29 bp downstream
Tssr33115	transcription start site region 33115	88 bp downstream
Tssr33116	transcription start site region 33116	493 bp downstream
Tssr33117	transcription start site region 33117	723 bp downstream
Tssr33118	transcription start site region 33118	750 bp downstream
Tssr33119	transcription start site region 33119	776 bp downstream
Tssr33120	transcription start site region 33120	1326 bp downstream
Tssr33121	transcription start site region 33121	1619 bp downstream
Tssr33122	transcription start site region 33122	1713 bp downstream