rs30041378 SNP Detail

Summary

• ID
  rs30041378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA CAAGATCCTT CCAATTTTAC
  R
  AGTAGGAACC TGCAGTGTCT TGTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49593934	NES12919653	PERLEGEN	MM_PANEL2	f	SNP	A			G	A	A	G		G		G	A	G		G
ss135158407	ENSMUSSNP6248140	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss320757160	CHEV_3_50170820	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30041378					SNP	A	A	G	G	A	A	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593934	NES12919653	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321347 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	468 bp upstream
Tssr33102	transcription start site region 33102	445 bp upstream
Tssr33103	transcription start site region 33103	371 bp upstream
Tssr33104	transcription start site region 33104	357 bp upstream
Tssr33105	transcription start site region 33105	273 bp upstream
Tssr33106	transcription start site region 33106	252 bp upstream
Tssr33107	transcription start site region 33107	227 bp upstream
Tssr33108	transcription start site region 33108	157 bp upstream
Tssr33109	transcription start site region 33109	99 bp upstream
Tssr33110	transcription start site region 33110	32 bp upstream
Tssr33111	transcription start site region 33111	10 bp upstream
Tssr33112	transcription start site region 33112	16 bp downstream
Tssr33113	transcription start site region 33113	62 bp downstream
Tssr33114	transcription start site region 33114	86 bp downstream
Tssr33115	transcription start site region 33115	145 bp downstream
Tssr33116	transcription start site region 33116	550 bp downstream
Tssr33117	transcription start site region 33117	780 bp downstream
Tssr33118	transcription start site region 33118	807 bp downstream
Tssr33119	transcription start site region 33119	833 bp downstream
Tssr33120	transcription start site region 33120	1383 bp downstream
Tssr33121	transcription start site region 33121	1676 bp downstream
Tssr33122	transcription start site region 33122	1770 bp downstream