rs30041379 SNP Detail

Summary

• ID
  rs30041379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAAGTAG TCGCTGTGAT
  ATACATCCAG ACATATAGAA AAATATAGGT ATTATGACAC AGAATGTTTT GGTCTTAGAT
  TAAAAAAAAA TGCTAGGGAC TAGTATCTGA AATCATTAGA ATACTAAGCT ATTTAATGTA
  AATTTTCCTG CTATAAACTT TCATTCATTA CAAATAATGT TTTTCTTTTA TTTACTCAAA
  R
  TACTCTTCTA CTCTAAGATA ACATTATATT ATTTAGTAAG TAGAGTGACA GAGAGATTAT
  AGGCATAGAA TAATTCCTAA ATTCTTTGAA ACAAGATCCT TCCAATTTTA CAAGTAGGAA
  CCTGCAGTGT CTTGTCTCCT GGTAGGATAT GACTGTAGAT CTGAGTCTAT GGTTATTAAG
  GGTCATTAGT AAGAGTAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49593935	NES12919652	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30041379					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593935	NES12919652	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321235 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	356 bp upstream
Tssr33102	transcription start site region 33102	333 bp upstream
Tssr33103	transcription start site region 33103	259 bp upstream
Tssr33104	transcription start site region 33104	245 bp upstream
Tssr33105	transcription start site region 33105	161 bp upstream
Tssr33106	transcription start site region 33106	140 bp upstream
Tssr33107	transcription start site region 33107	115 bp upstream
Tssr33108	transcription start site region 33108	45 bp upstream
Tssr33109	transcription start site region 33109	2 bp downstream
Tssr33110	transcription start site region 33110	56 bp downstream
Tssr33111	transcription start site region 33111	89 bp downstream
Tssr33112	transcription start site region 33112	128 bp downstream
Tssr33113	transcription start site region 33113	174 bp downstream
Tssr33114	transcription start site region 33114	198 bp downstream
Tssr33115	transcription start site region 33115	257 bp downstream
Tssr33116	transcription start site region 33116	662 bp downstream
Tssr33117	transcription start site region 33117	892 bp downstream
Tssr33118	transcription start site region 33118	919 bp downstream
Tssr33119	transcription start site region 33119	945 bp downstream
Tssr33120	transcription start site region 33120	1495 bp downstream
Tssr33121	transcription start site region 33121	1788 bp downstream
Tssr33122	transcription start site region 33122	1882 bp downstream