rs30041380 SNP Detail

Summary

• ID
  rs30041380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT GCTATAAACT TTCATTCATT
  R
  CAAATAATGT TTTTCTTTTA TTTAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49593936	NES12919651	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A	A	G	G	G		G	G	A	G		G
ss135158398	ENSMUSSNP5675876	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss320757157	CHEV_3_50170677	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30041380					SNP	A	A	G	G	G	A	A	A	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593936	NES12919651	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321204 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	325 bp upstream
Tssr33102	transcription start site region 33102	302 bp upstream
Tssr33103	transcription start site region 33103	228 bp upstream
Tssr33104	transcription start site region 33104	214 bp upstream
Tssr33105	transcription start site region 33105	130 bp upstream
Tssr33106	transcription start site region 33106	109 bp upstream
Tssr33107	transcription start site region 33107	84 bp upstream
Tssr33108	transcription start site region 33108	14 bp upstream
Tssr33109	transcription start site region 33109	33 bp downstream
Tssr33110	transcription start site region 33110	87 bp downstream
Tssr33111	transcription start site region 33111	120 bp downstream
Tssr33112	transcription start site region 33112	159 bp downstream
Tssr33113	transcription start site region 33113	205 bp downstream
Tssr33114	transcription start site region 33114	229 bp downstream
Tssr33115	transcription start site region 33115	288 bp downstream
Tssr33116	transcription start site region 33116	693 bp downstream
Tssr33117	transcription start site region 33117	923 bp downstream
Tssr33118	transcription start site region 33118	950 bp downstream
Tssr33119	transcription start site region 33119	976 bp downstream
Tssr33120	transcription start site region 33120	1526 bp downstream
Tssr33121	transcription start site region 33121	1819 bp downstream
Tssr33122	transcription start site region 33122	1913 bp downstream