rs30041382 SNP Detail

Summary

• ID
  rs30041382
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTTGCAT TTTTTTTTCT
  ACAGCAGCAG TAATGAAATT CTCAGATAAA ACTATTGTCT GACAAGTTTC TCCAAGAAGT
  GGTTAGGTTG CTCAGAATCA TAAAAGAATT TTGGTGGCTT GTGAAGTAGT CGCTGTGATA
  TACATCCAGA CATATAGAAA AATATAGGTA TTATGACACA GAATGTTTTG GTCTTAGATT
  W
  AAAAAAAATG CTAGGGACTA GTATCTGAAA TCATTAGAAT ACTAAGCTAT TTAATGTAAA
  TTTTCCTGCT ATAAACTTTC ATTCATTACA AATAATGTTT TTCTTTTATT TACTCAAAGT
  ACTCTTCTAC TCTAAGATAA CATTATATTA TTTAGTAAGT AGAGTGACAG AGAGATTATA
  GGCATAGAAT AATTCCTAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49593938	NES12919649	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	A	A	T	T	T	A	T	A	A	T
ss135158392	ENSMUSSNP3714403	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30041382					SNP	A	A	T	T	T	A	A	A	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593938	NES12919649	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321116 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	237 bp upstream
Tssr33102	transcription start site region 33102	214 bp upstream
Tssr33103	transcription start site region 33103	140 bp upstream
Tssr33104	transcription start site region 33104	126 bp upstream
Tssr33105	transcription start site region 33105	42 bp upstream
Tssr33106	transcription start site region 33106	21 bp upstream
Tssr33107	transcription start site region 33107	within coordinates
Tssr33108	transcription start site region 33108	56 bp downstream
Tssr33109	transcription start site region 33109	121 bp downstream
Tssr33110	transcription start site region 33110	175 bp downstream
Tssr33111	transcription start site region 33111	208 bp downstream
Tssr33112	transcription start site region 33112	247 bp downstream
Tssr33113	transcription start site region 33113	293 bp downstream
Tssr33114	transcription start site region 33114	317 bp downstream
Tssr33115	transcription start site region 33115	376 bp downstream
Tssr33116	transcription start site region 33116	781 bp downstream
Tssr33117	transcription start site region 33117	1011 bp downstream
Tssr33118	transcription start site region 33118	1038 bp downstream
Tssr33119	transcription start site region 33119	1064 bp downstream
Tssr33120	transcription start site region 33120	1614 bp downstream
Tssr33121	transcription start site region 33121	1907 bp downstream