rs30041485 SNP Detail

Summary

• ID
  rs30041485
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44216512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGACATCACA TTATGTCTAA GGGTGTATCT GTCTGAAGAG GAAGTCAGAA GGATGGAGAA
  GGAAAATAAA ACGAAACTCC TTAGTTTTGT GATCTTAAAT TACTTAAGCC ATATGGGCCT
  AATGCACTAC TGAGGCTCAC TAAGGGTTTG CTACATCTAG CCTTGTTTCT GAGTGTTAAT
  TAGGGGATGG AGAAGCATCC AACCCCCCCA GGATCCTTAC CTGACATTTC ATCACTAGTC
  AAAGTACAAA ACCATCCCAT CAACAATTAT CAGGAGAGTA TATACTCTAT CGCCAGGCAC
  M
  AATGAACTCT GAGCCACAAT CCAGAAGAAA GGCCCAGGTC CTAAACAAGG ACTCACAGAC
  CAGGATCTGA CGGCTGAACC CCGCAACCAA TCCAAGGCGC AGGACCAGGG AGATCGGGAC
  ACGAAAAGGC CGGTGGGCAG CCTCGCCTGG GCGCTGAGGC CGGAGGATAG GTAGCTAGAA
  CTCAGAGGAA GTAGCCCATC CGGGAGAGCT TCCCGGGATC CCCGGCGTCA AGCGTGGTGC
  CGAGGGAGTC CAGCCGCAGA GACCCCCTAG CCCGAGGGCG CGGAGGCTAA GGGCCGGCAC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46367679	mCV23032973	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30041485					SNP	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44216512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	6 bp proximal
Hinfp	histone H4 transcription factor	within coordinates
Rr368726	regulatory region 368726	468 bp upstream
Tssr89139	transcription start site region 89139	380 bp downstream