rs30041762 SNP Detail

Summary

• ID
  rs30041762
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101864901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTAGGCCA GTAATGTGTC ACAAAGTGCA CTCAGATGGG
  AAAAGTGTCT GCCCTGTGAT GACACATGCT CTTAACTTCC CAAGAGACGT CTGAGGAATT
  R
  AGAAGTGTGG ATTCATGTGT GCCTGCATTT GCACACACGT GAACATACGT GGAACACCAC
  AGCTGCTGTG CTGTGTCTGT GAGCTTTGGC TGTCACTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46368334	mCV23562173	ABI	CRAMUS_MOUSE	f	SNP		A	A				G
ss61446077	NES16829089	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G		A	G		G	G	G
ss136869312	ENSMUSSNP4691862	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss323155267	CHEV_9_101890032	CHEVERUD	SCREENING_POP	f	SNP										G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30041762					SNP	G	A	A	A	A	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61446077	NES16829089	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101864901 () rs orientation: forward

Symbol	Name	Function Class
Ephb1	Eph receptor B1	within coordinates
Gm31326	predicted gene, 31326	1558 bp upstream
Gm69124	predicted gene, 69124	1459 bp upstream
Rr198441	regulatory region 198441	901 bp distal
Rr198442	regulatory region 198442	within coordinates
Tssr86718	transcription start site region 86718	1491 bp upstream