rs30042176 SNP Detail

Summary

• ID
  rs30042176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50320491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATACCAGC ACACCTATGA
  ATTTTTCTAC TCGTAGATGT AAAAAGCAAA AACATTAGTA GGCTAAATAT TTAGATAAAA
  CTTACAAACT CACATTTTAA TGAAGTACAT ACAGATATGT TAAAATAAAG ATGATTGATT
  GGACTGAGTT CTGAATTAAT AACTAAAATC TTCCTTTCCC AGTGCATGAC TACCATGTAA
  Y
  TCTCACTACA CAGTAAGAAT TACATGCTAT GAAATTCAGG GTTCAAGTCT TACCAGAGAG
  GGAAGACAAA TCAAGTTCTC CCAGCATCCT GCACAGCATT AGTGAGACAT TTAACTACCT
  CGTTTGTTTT GTTTTGTTTT GTTTTGTTTT GTTTTGTTTT GTTTTGTTTT ATCTTGTACA
  GCCCAAATAG AAAACATACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49593942	NES12919644	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30042176					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593942	NES12919644	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50320491 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	370 bp downstream
Tssr33102	transcription start site region 33102	391 bp downstream
Tssr33103	transcription start site region 33103	475 bp downstream
Tssr33104	transcription start site region 33104	487 bp downstream
Tssr33105	transcription start site region 33105	548 bp downstream
Tssr33106	transcription start site region 33106	592 bp downstream
Tssr33107	transcription start site region 33107	617 bp downstream
Tssr33108	transcription start site region 33108	681 bp downstream
Tssr33109	transcription start site region 33109	746 bp downstream
Tssr33110	transcription start site region 33110	800 bp downstream
Tssr33111	transcription start site region 33111	833 bp downstream
Tssr33112	transcription start site region 33112	872 bp downstream
Tssr33113	transcription start site region 33113	918 bp downstream
Tssr33114	transcription start site region 33114	942 bp downstream
Tssr33115	transcription start site region 33115	1001 bp downstream
Tssr33116	transcription start site region 33116	1406 bp downstream
Tssr33117	transcription start site region 33117	1636 bp downstream
Tssr33118	transcription start site region 33118	1663 bp downstream
Tssr33119	transcription start site region 33119	1689 bp downstream