rs30042177 SNP Detail

Summary

• ID
  rs30042177
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50320390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCTAAA GTGATTCCAC
  CAGAACCAGT TAATGATGCT TGCAGAAGAA TGTAAGCAAA GCTAAGTACA TTTACATAAA
  GCTCCTGATA CATTACTATC AACATACCAG CACACCTATG AATTTTTCTA CTCGTAGATG
  TAAAAAGCAA AAACATTAGT AGGCTAAATA TTTAGATAAA ACTTACAAAC TCACATTTTA
  R
  TGAAGTACAT ACAGATATGT TAAAATAAAG ATGATTGATT GGACTGAGTT CTGAATTAAT
  AACTAAAATC TTCCTTTCCC AGTGCATGAC TACCATGTAA TTCTCACTAC ACAGTAAGAA
  TTACATGCTA TGAAATTCAG GGTTCAAGTC TTACCAGAGA GGGAAGACAA ATCAAGTTCT
  CCCAGCATCC TGCACAGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49593943	NES12919642	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30042177					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593943	NES12919642	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50320390 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	471 bp downstream
Tssr33102	transcription start site region 33102	492 bp downstream
Tssr33103	transcription start site region 33103	576 bp downstream
Tssr33104	transcription start site region 33104	588 bp downstream
Tssr33105	transcription start site region 33105	649 bp downstream
Tssr33106	transcription start site region 33106	693 bp downstream
Tssr33107	transcription start site region 33107	718 bp downstream
Tssr33108	transcription start site region 33108	782 bp downstream
Tssr33109	transcription start site region 33109	847 bp downstream
Tssr33110	transcription start site region 33110	901 bp downstream
Tssr33111	transcription start site region 33111	934 bp downstream
Tssr33112	transcription start site region 33112	973 bp downstream
Tssr33113	transcription start site region 33113	1019 bp downstream
Tssr33114	transcription start site region 33114	1043 bp downstream
Tssr33115	transcription start site region 33115	1102 bp downstream
Tssr33116	transcription start site region 33116	1507 bp downstream
Tssr33117	transcription start site region 33117	1737 bp downstream
Tssr33118	transcription start site region 33118	1764 bp downstream
Tssr33119	transcription start site region 33119	1790 bp downstream