rs30042179 SNP Detail

Summary

• ID
  rs30042179
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:50320323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC ACCTATGAAT TTTTCTACTC
  S
  TAGATGTAAA AAGCAAAAAC ATTAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49593945	NES12919638	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	G	G	G	C	C		C	C	G	C		C
ss135158380	ENSMUSSNP4719760	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss320757149	CHEV_3_50169796	CHEVERUD	SCREENING_POP	f	SNP										C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30042179					SNP	G	C	C	C	G	G	G	C	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593945	NES12919638	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50320323 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11			Intron
				mRNA-UTR
Tssr33101	transcription start site region 33101			538 bp downstream
Tssr33102	transcription start site region 33102			559 bp downstream
Tssr33103	transcription start site region 33103			643 bp downstream
Tssr33104	transcription start site region 33104			655 bp downstream
Tssr33105	transcription start site region 33105			716 bp downstream
Tssr33106	transcription start site region 33106			760 bp downstream
Tssr33107	transcription start site region 33107			785 bp downstream
Tssr33108	transcription start site region 33108			849 bp downstream
Tssr33109	transcription start site region 33109			914 bp downstream
Tssr33110	transcription start site region 33110			968 bp downstream
Tssr33111	transcription start site region 33111			1001 bp downstream
Tssr33112	transcription start site region 33112			1040 bp downstream
Tssr33113	transcription start site region 33113			1086 bp downstream
Tssr33114	transcription start site region 33114			1110 bp downstream
Tssr33115	transcription start site region 33115			1169 bp downstream
Tssr33116	transcription start site region 33116			1574 bp downstream
Tssr33117	transcription start site region 33117			1804 bp downstream
Tssr33118	transcription start site region 33118			1831 bp downstream
Tssr33119	transcription start site region 33119			1857 bp downstream