rs30042180 SNP Detail

Summary

• ID
  rs30042180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50320228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCC ACCAGAACCA GTTAATGATG
  Y
  TTGCAGAAGA ATGTAAGCAA AGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49593946	NES12919636	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C	C	T	T	T		C	T	C	C		C
ss135158377	ENSMUSSNP52324	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320757148	CHEV_3_50169701	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30042180					SNP	C	C	T	T	T	C	C	C	T	T	T	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593946	NES12919636	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50320228 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	633 bp downstream
Tssr33102	transcription start site region 33102	654 bp downstream
Tssr33103	transcription start site region 33103	738 bp downstream
Tssr33104	transcription start site region 33104	750 bp downstream
Tssr33105	transcription start site region 33105	811 bp downstream
Tssr33106	transcription start site region 33106	855 bp downstream
Tssr33107	transcription start site region 33107	880 bp downstream
Tssr33108	transcription start site region 33108	944 bp downstream
Tssr33109	transcription start site region 33109	1009 bp downstream
Tssr33110	transcription start site region 33110	1063 bp downstream
Tssr33111	transcription start site region 33111	1096 bp downstream
Tssr33112	transcription start site region 33112	1135 bp downstream
Tssr33113	transcription start site region 33113	1181 bp downstream
Tssr33114	transcription start site region 33114	1205 bp downstream
Tssr33115	transcription start site region 33115	1264 bp downstream
Tssr33116	transcription start site region 33116	1669 bp downstream
Tssr33117	transcription start site region 33117	1899 bp downstream
Tssr33118	transcription start site region 33118	1926 bp downstream
Tssr33119	transcription start site region 33119	1952 bp downstream