rs30042183 SNP Detail

Summary

• ID
  rs30042183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50320024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCA GTGTGTTTCC AATCCTGTAT
  Y
  GAGATCACCA GAACAAAGGT GCCAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49593949	NES12919633	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C	C	T	T	T		T	T	C	T		T
ss135158374	ENSMUSSNP5008646	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320757147	CHEV_3_50169497	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30042183					SNP	C	C	T	T	T	C	C	C	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593949	NES12919633	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50320024 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	837 bp downstream
Tssr33102	transcription start site region 33102	858 bp downstream
Tssr33103	transcription start site region 33103	942 bp downstream
Tssr33104	transcription start site region 33104	954 bp downstream
Tssr33105	transcription start site region 33105	1015 bp downstream
Tssr33106	transcription start site region 33106	1059 bp downstream
Tssr33107	transcription start site region 33107	1084 bp downstream
Tssr33108	transcription start site region 33108	1148 bp downstream
Tssr33109	transcription start site region 33109	1213 bp downstream
Tssr33110	transcription start site region 33110	1267 bp downstream
Tssr33111	transcription start site region 33111	1300 bp downstream
Tssr33112	transcription start site region 33112	1339 bp downstream
Tssr33113	transcription start site region 33113	1385 bp downstream
Tssr33114	transcription start site region 33114	1409 bp downstream
Tssr33115	transcription start site region 33115	1468 bp downstream
Tssr33116	transcription start site region 33116	1873 bp downstream