rs30042289 SNP Detail

Summary

• ID
  rs30042289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37399799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTGA CTGGGAAATT TTAAACCAGT
  Y
  CCAAATCCCA GTGGACTGAG GTACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46368933	mCV23154089	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss136310474	ENSMUSSNP6108980	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
ss322907201	CHEV_9_37296088	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30042289					SNP	C	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37399799 () rs orientation: forward

Symbol	Name	Function Class
BB236558	expressed sequence BB236558	204 bp downstream
Cpgi21578	CpG island 21578	311 bp proximal
Gm69832	predicted gene, 69832	within coordinates
Msantd2	Myb/SANT-like DNA-binding domain containing 2	518 bp upstream
Rr676695	regulatory region 676695	28 bp proximal
Rr676696	regulatory region 676696	745 bp proximal
Rr676697	regulatory region 676697	1104 bp proximal
Tssr2827	transcription start site region 2827	559 bp upstream
Tssr84392	transcription start site region 84392	267 bp upstream
Tssr84393	transcription start site region 84393	485 bp upstream
Tssr84394	transcription start site region 84394	520 bp upstream
Tssr84395	transcription start site region 84395	778 bp upstream
Tssr88840	transcription start site region 88840	1326 bp downstream