rs30043075 SNP Detail

Summary

• ID
  rs30043075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTC TATGCTGTGC TCACAACTCA
  Y
  CACTCAGCAT CTGTGTATCA AAACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49593951	NES12919631	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C	C	T	T	T		T	T	C	T		T
ss135158365	ENSMUSSNP1265586	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss320757145	CHEV_3_50169310	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30043075					SNP	C	C	T	T	T	C	C	C	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593951	NES12919631	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319837 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	1024 bp downstream
Tssr33102	transcription start site region 33102	1045 bp downstream
Tssr33103	transcription start site region 33103	1129 bp downstream
Tssr33104	transcription start site region 33104	1141 bp downstream
Tssr33105	transcription start site region 33105	1202 bp downstream
Tssr33106	transcription start site region 33106	1246 bp downstream
Tssr33107	transcription start site region 33107	1271 bp downstream
Tssr33108	transcription start site region 33108	1335 bp downstream
Tssr33109	transcription start site region 33109	1400 bp downstream
Tssr33110	transcription start site region 33110	1454 bp downstream
Tssr33111	transcription start site region 33111	1487 bp downstream
Tssr33112	transcription start site region 33112	1526 bp downstream
Tssr33113	transcription start site region 33113	1572 bp downstream
Tssr33114	transcription start site region 33114	1596 bp downstream
Tssr33115	transcription start site region 33115	1655 bp downstream