rs30043078 SNP Detail

Summary

• ID
  rs30043078
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA CATCACATGT TTGTACACTC
  R
  TGCCAAGGAA TTCAAAGATA CATCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49593954	NES12919628	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G		G	G	G	G		G
ss320757143	CHEV_3_50169263	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30043078					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49593954	NES12919628	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319790 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	1071 bp downstream
Tssr33102	transcription start site region 33102	1092 bp downstream
Tssr33103	transcription start site region 33103	1176 bp downstream
Tssr33104	transcription start site region 33104	1188 bp downstream
Tssr33105	transcription start site region 33105	1249 bp downstream
Tssr33106	transcription start site region 33106	1293 bp downstream
Tssr33107	transcription start site region 33107	1318 bp downstream
Tssr33108	transcription start site region 33108	1382 bp downstream
Tssr33109	transcription start site region 33109	1447 bp downstream
Tssr33110	transcription start site region 33110	1501 bp downstream
Tssr33111	transcription start site region 33111	1534 bp downstream
Tssr33112	transcription start site region 33112	1573 bp downstream
Tssr33113	transcription start site region 33113	1619 bp downstream
Tssr33114	transcription start site region 33114	1643 bp downstream
Tssr33115	transcription start site region 33115	1702 bp downstream